This code solves the Fokker-Planck equation for the dynamic mass-spring-damper system depicted in the ForceBalance.png, considering only a single 'substrate' interaction. It can be used to validate the numerical simulations of the modified multi-bond model under the condition of a single substrate interaction. A publication with full explanations is soon to be submitted.
Instructions for use: The following MATLAB files should be located in the same folder:
- CallFokkerPlanckPDEMovingBC(Periodic or Harmonic)Potential.m
- PlotAllProbs.m
- CalcResults(Periodic or Harmonic)Potential.m
In lines 13-21, adjust the desired mechanical and dynamic parameters. Modify the spatial and temporal resolution in lines 24 and 25, respectively. Run CallFokkerPlanckPDEMovingBC to begin the simulation.